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{
 "chain": [],
 "cmd": "git-sedi ininformative uninformative",
 "exit": 0,
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Previously BehaviorDataLimsApi would raise an exception if no container id
was returned from lims id for given ophys id. This has been changed at
allenskd/internal/api/behavior_data_lims_api.py 105 - 108. Now the query will
return None for the container id if the query results in an empty list return.
Resolves: #1354

Fixed bug requiring additional IDs for BehaviorDataLimsApi

minor typo fix

Add ecephys optotagging tutorial

Previously the BehaviorOphysLimsApi did not compute
monitor delay, but added a default value of 0.351.
This updates the default to 0.215, which is the
average of monitor delay for a large number of recent
datasets.

Additionally use the OphysTimeAligner methods to
compute the display lag, which is used in the
OphysTimeSync job to produce corrected timestamps
in the LIMS pipeline.

Previously the BehaviorOphysLimsApi did not compute
monitor delay, but added a default value of 0.351.
This updates the default to 0.215, which is the
average of monitor delay for a large number of recent
datasets.

Additionally use the OphysTimeAligner methods to
compute the display lag, which is used in the
OphysTimeSync job to produce corrected timestamps
in the LIMS pipeline.

version and cache spec

WIP: Compute display lag in BehaviorOphysLimsApi

Fixes a bug where auto-rewarded trials were not properly
attributed in the rewards property of a visual behavior
Session. Update tests to cover multiple values of 'auto_reward'.

…undant-trial-col

GH 771: Remove redundant 'sham_change' column from trials

…d-key

GH-712: Fix auto-rewarded in rewards results

If there are more "stimulus transitions" than "photodiode events",
truncate the "stimulus transitions" to the number of
"photodiode events". This is similar to what is done with
ophys timestamps data in this module. Update test coverage
to handle this case.

Update logging to show the min and max delay, to help
with debugging in the case of unusual/default values.

This reverts commit fbadaba.

Avoids memory errors from trying to load in large
data sets and generate a checksum all at once.

…large-data

Do checksums for data files in chunks

Add alias for _get_rf

NWB advises to include this keyword in the NWB file write. This keyword caches the extension in the NWB file so it's easier for others to read data. No need to import ecephys.nwb.

No longer needed to include in the NWB file attributes. Confirmed with Ben Dichter this is not required anymore.

Added cache_spec==True keyword to lfp_writer.write call

Accepting arbitrary kwargs led to confusion for scientists
accidentally passing incorrect keywords. This PR removes
the ability to pass arbitrary kwargs to public Project cache
constructors, to reduce the possibility of silent errors.

…ojectCache

…havior_ndx

add version to AIBS_ophys_behavior

Removed help from NWB file attributes

GH 1357: Project caches should not accept arbitrary kwargs

…tlib_hist_arg

updating to keyword density from normed for matplotlib.pyplot.hist